PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Gh_A01G0844
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Malvales; Malvaceae; Malvoideae; Gossypium
Family Nin-like
Protein Properties Length: 906aa    MW: 100919 Da    PI: 6.9057
Description Nin-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Gh_A01G0844genomeNAU-NBIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1RWP-RK93.61.4e-29587638152
       RWP-RK   1 aekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 
                  aek+i+l++l++yF++++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rkik++
  Gh_A01G0844 587 AEKTITLQVLRQYFAGSLKDAAKSLGVCPTTLKRICRQHGINRWPSRKIKKV 638
                  589***********************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5151917.757577658IPR003035RWP-RK domain
PfamPF020424.0E-26590638IPR003035RWP-RK domain
SuperFamilySSF542778.83E-23809896No hitNo description
PROSITE profilePS5174526.329810893IPR000270PB1 domain
SMARTSM006665.2E-28810893IPR000270PB1 domain
Gene3DG3DSA:3.10.20.2403.1E-22811890No hitNo description
CDDcd064074.80E-41812891No hitNo description
PfamPF005643.0E-19812892IPR000270PB1 domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 906 aa     Download sequence    Send to blast
MDFDYMDELL LDGCWLETTQ GSDFLNPTLP FSNNFFDPAF AWPTTESNAG DLGGGLSHQG  60
ENQRSLLSGN LHWNEAQGES LVSPHFSQSH SLDSDCVTDG SEPNRRWWIR PSVNSGPATT  120
VMQRLIQALG YIKAFGKEKD VLVQLWLPVN RGGRRFLTTS EQPFSLDSKS QKLASYRNIS  180
VKYNFPAEED SKDMAGLPGR VFLSKVPEWT PDVRFFKRDE YPRVGHAQEH DVRGTFALPV  240
FEQGSGTCLG VIEVVMTTEK IKIQPELESV CKALEAVNLR SSITSSTQNI KAYSNCYQAA  300
LPEIKELLRC ACETHRLPLA QAWVPCIQQG KEGCRHSSEN YVHCVSTVDD ACCIADPSIQ  360
GFHEACSEHH LLKGQGVVGR AFMTNQPCFM TDITSFKKTE YPLAHHAMMF NLHAAVAIRF  420
RSIHTGKADF VLEFFLPAHC RDPEGQRKML NSLSIIIQQV CCSLRVVTDK ELVEETDLAV  480
SEVVAPSDGL PIREESLKQQ CTRHHSKKLS GESSSCLTKV QQSSNTALVL EKEKPRPMLD  540
EKIPEVEQHQ QHISLQESVE CGDSTFNEIS FSSVTMGKTS EKRRSKAEKT ITLQVLRQYF  600
AGSLKDAAKS LGVCPTTLKR ICRQHGINRW PSRKIKKVGH SLQKLQHVID SVQGASGAFH  660
ISNFYANFPE LASPKLLGNS ALSTSPLNDK PKQINIQPEG GNFLSQGALS NSPSSSCSQS  720
SSSSHSCSSG THRPSNFNMP GKEDHIIGDN SGDGELKRVK SDVELHALSQ EGPKLFPRSQ  780
SLRSLKEQLI CDNLQPISKN TSPIAHDLEA QRVKVTYGDE KIRFRMQSKW RFKDLLHEIA  840
RRFNIDDISR FDLKYLDDDS EWVLLTCDAD MVECIDVCGS SQGNTIKLSL QVSHHHLDQF  900
SGSTGS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_012464609.10.0PREDICTED: protein NLP4-like
RefseqXP_012464617.10.0PREDICTED: protein NLP4-like
RefseqXP_012464624.10.0PREDICTED: protein NLP4-like
SwissprotQ9LE380.0NLP4_ARATH; Protein NLP4
TrEMBLA0A0B0PXA30.0A0A0B0PXA3_G
STRINGPOPTR_0005s27310.10.0(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM34612663
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G20640.20.0Nin-like family protein